Surface AtlasMucinous colon cancer

CD74

HLA class II histocompatibility antigen gamma chain. UniProt annotates extracellular residues 73–296.

Sequence and protein regions

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RNA expression by cell type

Percentage of cells with detected CD74 RNA in the public colon adenocarcinoma cell groups.

Macrophages (group B)94.2%
Dendritic cells90.8%
B cells88.2%
Macrophages (group A)80.0%
Regulatory T cells72.7%
Endothelial cells68.5%
CD8 T cells63.1%
CD4 T cells58.4%
Natural killer cells46.1%
Fibroblasts37.9%
Tumor cells36.5%
Adipocytes28.4%
Granulocytes25.9%
RNA detection · Cancer Surfaceome Atlas, Table S6, row 165. Source study · Measurements (JSON)

Sequence & binding sites

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Sequence annotations and source records

Canonical sequence and topology

Target ID
T-ENSG00000019582
UniProt accession
P04233
Sequence state
available
Canonical sequence
Yes
Length in amino acids
296
Sequence SHA-256
f6909ab67f84bc41d8ef8976b6e5634ebcb9031613d297ac41e582c377b48728
View and select the full canonical sequence
Sequence positions 1–296

Gray shows the full canonical sequence. Colored spans mark the listed intervals.

Membrane-spanning segments
47–72: Helical; Signal-anchor for type II membrane protein
47–72 (Helical; Signal-anchor for type II membrane protein)
Source-annotated domains
1–46: Cytoplasmic73–296: Extracellular
1–46 (Cytoplasmic); 73–296 (Extracellular)
Source-annotated extracellular intervals
73–296
73–296

UniProt annotates the following extracellular intervals.

One-based positions include both interval endpoints.
StartEndLengthSequence and source
73296224
Sequence and source
Basis
reviewed-uniprot-topological-domain
Evidence class
source-annotated-topology
Sequence SHA-256
4c6a65f31114216087588bc2f5a42600f9a25cb2046733fe44f984338750b607
Sequence and topology sources
Source role
canonical-sequence
Source
alphafold-db-canonical-uniprot-field
Extracted field
uniprotSequence
Source row accession
Not recorded

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Source role
reviewed-topology
Source
UniProt reviewed human surface-field snapshot
Extracted field
Not recorded
Source row accession
P04233

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subcellular_location
SUBCELLULAR LOCATION: Cell membrane {ECO:0000305}; Single-pass type II membrane protein {ECO:0000305}. Endoplasmic reticulum membrane. Golgi apparatus, trans-Golgi network. Endosome. Lysosome. Secreted {ECO:0000269|PubMed:25326458, ECO:0000269|PubMed:36213313, ECO:0000269|PubMed:37453717}. Note=Transits through a number of intracellular compartments in the endocytic pathway. It can either undergo proteolysis or reach the cell membrane.; SUBCELLULAR LOCATION: [Isoform p41]: Late endosome {ECO:0000250|UniProtKB:P04441}. Lysosome {ECO:0000250|UniProtKB:P04441}.
transmembrane
TRANSMEM 47..72; /note="Helical; Signal-anchor for type II membrane protein"; /evidence="ECO:0000255"
topological_domain
TOPO_DOM 1..46; /note="Cytoplasmic"; /evidence="ECO:0000255"; TOPO_DOM 73..296; /note="Extracellular"; /evidence="ECO:0000255"
signal_peptide
Not recorded
lipidation
Not recorded

Download all canonical target sequences (FASTA)

Protein identity and location

Protein
HLA class II histocompatibility antigen gamma chain
Protein location
Transmembrane protein
Canonical sequence
P04233 · 296 amino acids
Extracellular region
UniProt annotates extracellular residues 73–296.

Expression in normal tissues

RNA specificity
Tissue enhanced
RNA distribution
Detected in all
RNA tissue-specific nTPM
lymphoid tissue: 4,925.3
Protein specificity
Tissue enhanced
Protein distribution
Detected in all
Immunohistochemistry reliability
Enhanced
Immunofluorescence reliability
Supported
Protein tissue-specific intensity
lymphoid tissue: 91,191,182.8
Tissue cell-type enrichment
Adipose visceral - T-cells, Thyroid gland - T-cells
Subcellular location
Golgi apparatus

Sources and downloads

CD74 · ENSG00000019582 · P04233

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